JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO1C_chr17_1459186_1497686	0/0	c0058	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0059	3192	1	0	0	0	0	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0060	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0061	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0062	3192	1	0	0	0	0	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0063	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0064	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0065	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0066	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0067	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0068	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0069	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0070	3192	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	c0071	3192	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1D_chr17_32487522_32882124	1/1	c0001	3021	224	64	52	67	10	29	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0002	3021	5	5	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0003	3021	2	0	0	2	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0004	3021	2	0	0	2	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0005	3021	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0006	3021	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0007	3021	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0008	3021	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0009	3021	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0010	3021	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0011	3021	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0012	3021	1	0	0	0	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0013	3021	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0014	3021	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	c0015	3021	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1E_chr15_59127434_59377871	0/0	c0001	3327	77	17	15	35	2	8	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	1/0	c0002	3327	66	19	17	20	7	2	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0003	3327	34	16	7	7	1	3	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0004	3327	32	26	4	0	1	1	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0005	3327	2	2	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0006	3327	2	0	0	2	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0007	3327	1	0	0	1	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0008	3327	1	0	1	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0009	3327	1	1	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0010	3327	1	0	0	0	1	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0011	3327	1	1	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0012	3327	1	1	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/1	c0013	3327	1	0	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0014	3327	1	1	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0015	3327	1	1	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0016	3327	1	0	1	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0017	3327	1	0	1	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0018	3327	1	0	0	1	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	c0019	3327	1	1	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1F_chr19_8515778_8582442	1/1	c0001	3297	273	47	72	99	18	35	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0002	3297	17	17	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442