JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AOC1_chr7_150847517_150866504	0/0	c0029	2256	1	0	0	0	1	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0030	2256	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0031	2256	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0032	2256	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0033	2256	1	1	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0034	2256	1	0	0	0	0	1	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0035	2256	1	1	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0036	2256	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0037	2256	1	0	0	0	0	1	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0038	2256	1	1	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	c0039	2256	1	1	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC2_chr17_42839580_42855707	1/1	c0001	2271	265	83	73	64	8	35	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0002	2271	5	5	0	0	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0003	2271	5	0	0	5	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0004	2271	5	0	0	5	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0005	2271	4	4	0	0	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0006	2271	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0007	2271	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0008	2271	1	0	1	0	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0009	2271	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0010	2271	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	c0011	2271	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC3_chr17_42846199_42863124	1/1	c0001	2292	221	62	60	66	5	26	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0002	2292	11	0	0	7	0	4	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0003	2292	11	0	7	0	0	4	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0004	2292	10	10	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0005	2292	5	1	1	0	3	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0006	2292	5	5	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0007	2292	5	5	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0008	2292	3	3	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0009	2292	2	2	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0010	2292	2	2	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0011	2292	1	0	0	1	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0012	2292	1	0	0	1	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0013	2292	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0014	2292	1	0	0	0	0	1	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0015	2292	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0016	2292	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0017	2292	1	0	0	1	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0018	2292	1	0	0	0	0	1	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	c0019	2292	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOPEP_chr9_94721699_95092159	1/1	c0001	2460	128	42	18	44	2	20	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0002	2460	11	11	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0003	2460	11	0	0	11	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0004	2460	5	0	2	3	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0005	2460	5	0	0	5	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0006	2460	4	4	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0007	2460	4	4	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0008	2460	3	2	1	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0009	2460	2	2	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159