JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO1F_chr19_8515778_8582442	0/0	c0003	3297	10	10	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0004	3298	5	0	1	4	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0005	3297	5	0	0	5	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0006	3297	4	4	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0007	3297	3	0	3	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0008	3297	3	2	1	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0009	3297	3	0	3	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0010	3297	3	1	0	2	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0011	3297	2	2	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0012	3297	2	0	0	0	0	2	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0013	3297	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0014	3297	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0015	3297	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0016	3297	1	0	0	0	0	1	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0017	3297	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0018	3297	1	0	0	0	0	1	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0019	3297	1	0	0	0	0	1	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0020	3297	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0021	3297	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0022	3297	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0023	3297	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	c0024	3297	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1G_chr7_44957662_44984015	0/0	c0001	3057	168	35	27	80	8	18	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0002	3057	51	27	6	8	0	10	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/1	c0003	3057	51	7	15	23	3	2	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	1/0	c0004	3057	40	1	14	15	2	7	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0005	3057	38	5	13	13	3	4	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0006	3057	3	3	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0007	3057	3	3	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0008	3057	3	3	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0009	3057	2	1	1	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0010	3057	2	0	1	0	0	1	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0011	3057	2	2	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0012	3057	2	0	0	2	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0013	3057	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0014	3057	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0015	3057	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0016	3057	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0017	3057	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0018	3057	1	0	0	0	0	1	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0019	3057	1	0	0	0	0	1	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0020	3057	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0021	3057	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0022	3057	1	0	1	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0023	3057	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0024	3057	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	c0025	3057	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1H_chr12_109342900_109453379	1/0	c0001	3117	75	1	11	49	5	8	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/1	c0002	3117	55	3	12	31	4	4	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0003	3117	50	26	10	4	3	7	copy fasta	MYO1H	chr12	109342900	109453379