JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO1H_chr12_109342900_109453379	0/0	c0004	3117	35	19	5	6	1	4	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0005	3117	23	4	0	18	1	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0006	3117	16	15	1	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0007	3117	8	0	5	1	0	2	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0008	3117	8	8	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0009	3117	7	0	2	1	0	4	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0010	3117	7	0	0	5	0	2	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0011	3117	3	0	0	3	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0012	3117	3	0	3	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0013	3117	2	0	0	2	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0014	3117	2	0	1	0	0	1	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0015	3117	2	0	0	2	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0016	3117	2	2	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0017	3117	2	0	0	0	0	2	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0018	3117	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0019	3117	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0020	3117	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0021	3117	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0022	3117	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0023	3117	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0024	3117	1	0	0	0	0	1	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0025	3117	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0026	3117	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0027	3117	1	0	0	0	0	1	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0028	3117	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	c0029	3117	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO3A_chr10_25929229_26217532	0/0	c0001	4851	62	13	12	27	3	7	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	1/0	c0002	4851	60	9	9	31	4	6	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0003	4851	58	9	13	31	2	3	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0004	4851	12	0	5	7	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0005	4851	9	5	4	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/1	c0006	4851	8	1	4	0	1	1	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0007	4851	7	7	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0008	4851	5	3	2	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0009	4851	4	0	3	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0010	4851	4	3	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0011	4851	4	3	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0012	4851	3	3	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0013	4851	3	3	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0014	4851	3	0	0	3	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0015	4851	2	0	0	2	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0016	4851	2	2	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0017	4851	2	2	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0018	4851	2	2	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0019	4851	2	2	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0020	4851	2	1	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0021	4851	2	2	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0022	4851	2	1	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0023	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0024	4851	1	0	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532