JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO3A_chr10_25929229_26217532	0/0	c0025	4851	1	0	0	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0026	4851	1	0	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0027	4851	1	0	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0028	4851	1	0	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0029	4851	1	0	0	0	0	1	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0030	4851	1	0	0	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0031	4851	1	0	0	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0032	4851	1	0	0	0	0	1	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0033	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0034	4851	1	0	0	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0035	4820	1	0	0	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0036	4851	1	0	0	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0037	4851	1	0	0	0	0	1	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0038	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0039	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0040	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0041	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0042	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0043	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	c0044	4851	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3B_chr2_170173147_170660167	0/0	c0001	4026	19	3	5	5	2	4	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0002	4026	15	7	4	2	1	1	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0003	4026	9	1	2	4	0	2	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0004	4026	8	5	0	0	2	1	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0005	4026	8	1	0	7	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0006	4026	5	2	0	2	1	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0007	4026	5	2	3	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0008	4026	4	0	0	3	0	1	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0009	4026	4	0	1	3	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0010	4026	4	2	0	2	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0011	4026	3	0	3	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0012	4026	3	0	0	0	0	3	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0013	4026	3	1	0	1	0	1	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0014	4026	3	2	1	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0015	4026	3	0	0	1	2	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0016	4026	2	2	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0017	4026	2	2	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0018	4026	2	1	0	1	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0019	4026	2	0	0	0	0	2	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0020	4026	2	2	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0021	4026	2	2	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0022	4026	2	1	0	1	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/1	c0023	4026	2	0	0	0	0	1	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0024	4026	2	2	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0025	4026	2	0	0	2	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0026	4026	2	0	0	2	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0027	4026	2	2	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0028	4026	2	2	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0029	4026	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	c0030	4026	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167