JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO5A_chr15_52302283_52533880	0/0	c0001	5643	91	25	8	43	0	15	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0002	5643	55	6	13	28	2	6	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0003	5643	50	6	10	20	5	9	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/1	c0004	5643	29	1	2	17	3	5	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0005	5643	20	13	1	2	0	4	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0006	5643	14	7	2	5	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0007	5643	9	7	2	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0008	5643	7	7	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0009	5643	3	3	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0010	5643	3	0	0	1	0	2	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0011	5643	2	2	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0012	5643	2	0	2	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0013	5643	2	1	0	0	1	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0014	5643	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0015	5643	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0016	5643	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	1/0	c0017	5643	1	0	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0018	5643	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0019	5643	1	0	1	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0020	5643	1	0	1	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0021	5643	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0022	5643	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0023	5643	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0024	5643	1	0	0	0	1	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0025	5643	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0026	5643	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0027	5643	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	c0028	5643	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5B_chr18_49817789_50200147	0/1	c0001	5547	41	17	9	9	1	4	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0002	5547	32	17	9	4	0	2	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0003	5550	25	5	1	16	0	3	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0004	5547	15	3	4	6	0	2	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0005	5550	14	2	5	6	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0006	5547	14	0	1	12	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0007	5550	13	2	0	9	1	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	1/0	c0008	5547	3	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0009	5550	3	1	1	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0010	5550	3	3	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0011	5550	3	0	1	0	0	2	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0012	5547	3	0	0	3	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0013	5547	3	0	0	2	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0014	5550	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0015	5547	2	0	1	0	1	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0016	5550	2	0	1	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0017	5547	2	0	1	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0018	5550	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0019	5547	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0020	5547	2	1	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0021	5550	2	0	0	2	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0022	5550	2	0	0	2	0	0	copy fasta	MYO5B	chr18	49817789	50200147