JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO5B_chr18_49817789_50200147	0/0	c0023	5550	2	0	0	0	0	2	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0024	5547	2	0	2	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0025	5547	2	1	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0026	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0027	5547	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0028	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0029	5550	1	0	0	0	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0030	5550	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0031	5550	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0032	5547	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0033	5547	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0034	5547	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0035	5550	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0036	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0037	5547	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0038	5547	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0039	5550	1	0	0	0	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0040	5550	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0041	5547	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0042	5547	1	0	0	0	1	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0043	5547	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0044	5550	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0045	5547	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0046	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0047	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0048	5550	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0049	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0050	5547	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0051	5550	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0052	5550	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0053	5547	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0054	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0055	5547	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0056	5547	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0057	5547	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0058	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0059	5550	1	0	0	0	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0060	5547	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0061	5550	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0062	5547	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0063	5547	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0064	5550	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0065	5550	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0066	5547	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	c0067	5550	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5C_chr15_52187322_52300804	0/0	c0001	5229	129	17	11	87	0	14	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0002	5229	53	2	4	46	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/1	c0003	5229	52	8	24	2	3	14	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0004	5229	26	20	4	1	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0005	5229	20	0	3	16	0	1	copy fasta	MYO5C	chr15	52187322	52300804