JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO5C_chr15_52187322_52300804	0/0	c0006	5229	15	1	4	10	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	1/0	c0007	5229	10	9	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0008	5229	6	5	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0009	5229	6	6	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0010	5229	4	4	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0011	5229	4	1	2	0	1	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0012	5229	3	0	3	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0013	5229	3	0	0	3	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0014	5229	3	3	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0015	5229	2	0	0	0	0	2	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0016	5229	2	2	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0017	5229	2	0	0	2	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0018	5229	2	0	0	0	0	2	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0019	5229	2	2	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0020	5229	2	2	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0021	5229	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0022	5229	1	0	0	1	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0023	5229	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0024	5229	1	0	0	0	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0025	5229	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0026	5229	1	0	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0027	5229	1	0	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0028	5229	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0029	5229	1	0	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0030	5229	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0031	5229	1	0	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0032	5229	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0033	5229	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	c0034	5229	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO6_chr6_75744239_75924537	1/1	c0001	3858	305	71	33	158	15	26	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0002	3858	19	0	0	19	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0003	3858	11	0	1	3	1	6	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0004	3858	7	7	0	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0005	3858	3	3	0	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0006	3858	2	1	1	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0007	3858	2	1	1	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0008	3858	2	2	0	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0009	3858	2	0	2	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0010	3858	1	0	1	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0011	3858	1	0	0	1	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0012	3858	1	1	0	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0013	3858	1	0	1	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	c0014	3858	1	0	0	1	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO7A_chr11_77123246_77220241	0/0	c0001	6648	37	2	7	21	5	2	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	1/0	c0002	6648	32	1	5	21	1	3	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0003	6648	20	0	6	10	1	3	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/1	c0004	6648	19	0	2	13	3	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0005	6648	18	8	1	9	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0006	6648	16	1	5	5	0	5	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0007	6648	9	1	1	7	0	0	copy fasta	MYO7A	chr11	77123246	77220241