JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO7A_chr11_77123246_77220241	0/0	c0108	6648	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0109	6649	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0110	6649	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0111	6649	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0112	6649	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0113	6649	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0114	6649	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0115	6649	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0116	6648	1	0	0	0	0	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0117	6648	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0118	6648	1	0	0	0	0	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0119	6648	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0120	6648	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0121	6648	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0122	6648	1	0	0	0	0	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0123	6718	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0124	6648	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0125	6648	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0126	6648	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0127	6648	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0128	6648	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0129	6649	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	c0130	6648	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7B_chr2_127530683_127642726	0/1	c0001	6429	38	1	13	16	1	6	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0002	6429	36	19	8	8	0	1	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0003	6429	30	3	7	12	2	6	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	1/0	c0004	6429	18	0	3	9	0	5	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0005	6429	15	2	4	7	0	2	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0006	6429	13	1	6	1	4	1	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0007	6429	12	2	6	1	2	1	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0008	6429	9	6	1	1	0	1	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0009	6429	8	0	2	0	2	4	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0010	6429	6	5	1	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0011	6429	5	1	0	2	0	2	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0012	6429	5	0	0	5	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0013	6429	5	4	1	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0014	6429	4	4	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0015	6429	4	3	1	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0016	6429	3	3	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0017	6429	3	3	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0018	6429	3	3	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0019	6429	2	0	2	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0020	6429	2	0	0	0	0	2	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0021	6429	2	0	2	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0022	6429	2	0	2	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0023	6429	2	2	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0024	6429	2	2	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0025	6429	2	0	0	0	1	1	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0026	6429	2	0	0	2	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	c0027	6429	2	1	1	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726