JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AOPEP_chr9_94721699_95092159	0/0	c0010	2460	2	0	0	0	0	2	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0011	2460	2	1	1	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0012	2460	1	0	0	1	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0013	2460	1	1	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0014	2460	1	0	0	0	0	1	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0015	2460	1	0	0	0	0	1	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	c0016	2460	1	1	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOX1_chr2_200581014_200676495	1/0	c0001	4017	265	42	53	130	7	32	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/1	c0002	4017	38	1	11	18	2	5	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0003	4017	17	13	0	0	2	2	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0004	4017	8	0	4	4	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0005	4017	5	5	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0006	4017	4	4	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0007	4017	4	0	0	4	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0008	4017	3	3	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0009	4017	2	2	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0010	4017	2	2	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0011	4017	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0012	4017	1	0	0	0	0	1	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0013	4017	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0014	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0015	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0016	4017	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0017	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0018	4017	1	0	0	0	0	1	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0019	4017	1	0	0	0	1	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0020	4017	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0021	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0022	4017	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0023	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0024	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0025	4017	1	0	1	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0026	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0027	4017	1	0	1	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0028	4017	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0029	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0030	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0031	4017	1	0	0	0	0	1	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	c0032	4017	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AP1AR_chr4_112226787_112278110	1/1	c0001	909	388	83	70	188	12	33	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	c0002	909	5	4	1	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	c0003	909	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	c0004	909	1	0	0	0	0	1	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	c0005	909	1	0	1	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	c0006	909	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	c0007	909	1	1	0	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1B1_chr22_29322680_29393570	0/0	c0001	2850	199	41	29	103	6	20	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	1/1	c0002	2850	103	12	24	49	6	10	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0003	2850	47	25	7	11	1	3	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0004	2850	11	11	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570