JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO9A_chr15_71817291_72123150	0/0	c0004	7647	11	0	0	10	1	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0005	7647	8	3	5	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	1/0	c0006	7647	8	5	2	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0007	7647	7	3	3	0	1	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0008	7647	6	6	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0009	7647	5	5	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0010	7647	5	0	0	5	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0011	7647	4	0	0	4	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0012	7647	3	3	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0013	7647	3	3	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0014	7647	2	0	0	1	0	1	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0015	7647	2	0	0	2	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0016	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0017	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0018	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0019	7647	1	0	0	1	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0020	7647	1	0	0	1	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0021	7647	1	0	0	1	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0022	7647	1	0	0	1	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0023	7647	1	0	1	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0024	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0025	7647	1	0	0	1	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0026	7647	1	0	1	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0027	7647	1	0	1	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0028	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0029	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0030	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0031	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0032	7647	1	0	0	1	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0033	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0034	7647	1	0	1	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	c0035	7647	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9B_chr19_17070777_17218286	0/0	c0001	6474	101	27	19	41	3	11	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	1/0	c0002	6474	28	0	1	21	1	4	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0003	6474	13	1	4	4	0	4	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0004	6474	13	6	1	5	0	1	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0005	6474	10	1	1	5	0	3	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0006	6474	9	7	2	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0007	6474	5	5	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0008	6474	4	1	2	0	0	1	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0009	6474	4	0	1	0	3	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0010	6474	4	1	2	0	1	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0011	6474	3	0	0	0	0	3	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0012	6474	3	1	2	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0013	6474	3	0	3	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0014	6474	3	1	0	1	0	1	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0015	6474	2	0	2	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0016	6474	2	2	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0017	6474	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0018	6474	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286