JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYO9B_chr19_17070777_17218286	0/0	c0069	6474	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0070	6474	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	c0071	6474	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYOCD_chr17_12660890_12773949	1/1	c0001	2961	249	56	45	106	7	33	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0002	2961	29	0	3	25	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0003	2961	15	15	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0004	2961	7	0	7	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0005	2961	7	0	1	3	0	3	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0006	2961	5	5	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0007	2961	4	0	1	0	3	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0008	2961	4	4	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0009	2961	2	0	2	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0010	2961	2	1	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0011	2961	2	2	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0012	2961	2	2	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0013	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0014	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0015	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0016	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0017	2961	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0018	2961	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0019	2961	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0020	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0021	2961	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0022	2961	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0023	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0024	2961	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0025	2961	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0026	2961	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0027	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0028	2961	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0029	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	c0030	2961	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCOS_chr1_171617243_171631888	1/1	c0001	243	412	84	78	188	18	42	copy fasta	MYOCOS	chr1	171617243	171631888
MYOC_chr1_171630417_171657688	1/1	c0001	1515	367	78	67	176	15	29	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0002	1515	39	0	11	11	3	14	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0003	1515	8	8	0	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0004	1515	3	0	3	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0005	1515	2	0	0	2	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0006	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0007	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0008	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0009	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0010	1515	1	1	0	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0011	1515	1	0	1	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0012	1515	1	1	0	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0013	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0014	1515	1	1	0	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0015	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0016	1515	1	1	0	0	0	0	copy fasta	MYOC	chr1	171630417	171657688