JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYOC_chr1_171630417_171657688	0/0	c0017	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0018	1515	1	0	0	0	0	1	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0019	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	c0020	1515	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOD1_chr11_17714571_17727136	1/1	c0001	963	336	96	76	108	12	42	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	c0002	963	2	0	2	0	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	c0003	963	1	0	0	1	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	c0004	963	1	0	0	1	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOF_chr10_93301429_93487334	0/1	c0001	6186	62	12	19	15	3	12	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0002	6186	31	4	2	22	0	3	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	1/0	c0003	6186	29	9	10	5	1	3	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0004	6186	10	10	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0005	6186	9	1	1	5	2	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0006	6186	7	7	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0007	6186	6	6	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0008	6186	4	0	4	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0009	6186	4	3	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0010	6186	4	0	2	0	0	2	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0011	6186	4	0	1	1	1	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0012	6186	4	0	3	0	1	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0013	6186	3	0	0	3	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0014	6187	3	0	1	0	0	2	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0015	6186	3	3	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0016	6186	3	3	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0017	6186	2	1	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0018	6186	2	2	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0019	6186	2	0	2	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0020	6187	2	2	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0021	6186	2	1	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0022	6186	2	0	2	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0023	6186	2	2	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0024	6186	2	0	0	2	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0025	6186	2	1	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0026	6186	2	0	1	0	0	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0027	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0028	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0029	6186	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0030	6187	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0031	6186	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0032	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0033	6186	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0034	6186	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0035	6186	1	0	0	0	0	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0036	6186	1	0	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0037	6187	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0038	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0039	6186	1	0	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0040	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0041	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0042	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334