JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYOF_chr10_93301429_93487334	0/0	c0043	6186	1	0	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0044	6186	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0045	6186	1	0	0	0	0	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0046	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0047	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0048	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0049	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0050	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0051	6186	1	0	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0052	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0053	6186	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0054	6186	1	0	0	0	0	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0055	6186	1	0	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0056	6186	1	0	0	0	0	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0057	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0058	6186	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0059	6186	1	0	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	c0060	6186	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOG_chr1_203078129_203091012	1/1	c0001	675	439	95	82	198	18	44	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	c0002	675	7	0	0	7	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	c0003	675	3	0	0	3	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	c0004	675	3	3	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	c0005	675	3	0	1	2	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	c0006	675	2	0	1	0	0	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	c0007	675	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	c0008	675	1	0	0	0	0	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	c0009	675	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOM1_chr18_3061807_3224968	0/0	c0001	5058	14	0	3	10	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0002	5058	14	0	4	8	1	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0003	5058	13	0	7	4	0	2	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0004	5058	9	0	2	7	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0005	5058	8	0	1	6	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	1/1	c0006	5058	7	1	2	1	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0007	5058	6	0	0	4	0	2	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0008	5058	5	0	1	4	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0009	5058	4	0	0	4	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0010	5058	4	0	0	1	0	3	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0011	5058	4	0	1	1	0	2	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0012	5058	4	0	0	3	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0013	5058	4	1	0	3	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0014	5058	4	0	0	4	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0015	5058	4	1	0	3	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0016	5058	4	1	1	1	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0017	5058	3	0	0	3	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0018	5058	3	0	0	2	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0019	5058	3	0	0	2	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0020	5058	3	0	1	2	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0021	5058	3	0	0	3	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0022	5058	3	0	0	3	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0023	5058	3	0	0	3	0	0	copy fasta	MYOM1	chr18	3061807	3224968