JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYOM1_chr18_3061807_3224968	0/0	c0174	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0175	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0176	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0177	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0178	5058	1	0	0	0	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0179	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0180	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0181	5058	1	0	0	0	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0182	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0183	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0184	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0185	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0186	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0187	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0188	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0189	5058	1	0	0	0	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	c0190	5058	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM2_chr8_2040046_2150456	0/0	c0001	4398	22	0	3	19	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0002	4398	21	0	10	9	1	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0003	4398	16	1	2	10	3	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0004	4398	14	0	5	7	1	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0005	4398	11	0	4	7	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0006	4398	10	9	1	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0007	4398	10	2	0	2	2	4	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0008	4398	8	0	0	7	1	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0009	4398	6	0	4	1	1	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0010	4398	5	0	0	5	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0011	4398	5	0	2	2	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0012	4398	5	0	1	4	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0013	4398	5	0	2	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/1	c0014	4398	4	0	0	2	1	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0015	4398	4	3	1	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0016	4398	4	0	0	0	1	3	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0017	4398	4	1	1	0	0	2	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0018	4398	4	0	0	4	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0019	4398	3	2	1	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0020	4398	3	2	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0021	4398	3	0	0	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0022	4398	3	2	1	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0023	4398	3	3	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0024	4398	3	0	0	2	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0025	4398	3	0	0	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0026	4398	3	0	0	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0027	4398	3	3	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0028	4398	3	0	0	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0029	4398	2	0	0	0	0	2	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0030	4398	2	0	0	0	0	2	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0031	4398	2	0	0	1	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0032	4398	2	0	0	2	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0033	4398	2	0	1	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456