JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYOM2_chr8_2040046_2150456	0/0	c0184	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0185	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0186	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0187	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0188	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0189	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0190	4398	1	0	0	0	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0191	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0192	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0193	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0194	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0195	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0196	4398	1	0	1	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0197	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0198	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0199	4398	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0200	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0201	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0202	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0203	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0204	4398	1	0	0	0	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0205	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0206	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0207	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0208	4398	1	0	0	0	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0209	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0210	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0211	4398	1	0	1	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0212	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	c0213	4398	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM3_chr1_24051041_24117135	0/0	c0001	4314	41	1	7	25	6	2	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0002	4314	39	5	3	27	0	4	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0003	4314	32	0	7	21	1	3	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0004	4314	26	6	2	16	0	2	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/1	c0005	4314	26	3	9	8	1	4	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0006	4314	20	6	5	0	2	7	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0007	4314	17	0	11	1	1	4	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0008	4314	11	2	4	2	2	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0009	4314	9	0	6	0	0	3	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	1/0	c0010	4314	7	5	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0011	4314	5	5	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0012	4314	5	1	1	3	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0013	4314	5	3	2	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0014	4314	5	0	0	5	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0015	4314	4	2	0	2	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0016	4314	4	4	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0017	4314	4	0	1	3	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0018	4314	4	0	0	4	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0019	4314	4	0	0	4	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0020	4314	4	4	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135