JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYOM3_chr1_24051041_24117135	0/0	c0071	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0072	4314	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0073	4314	1	0	0	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0074	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0075	4314	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0076	4314	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0077	4314	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0078	4314	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0079	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0080	4314	1	0	0	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0081	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0082	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0083	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0084	4314	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0085	4314	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0086	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0087	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0088	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0089	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0090	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	c0091	4314	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYORG_chr9_34361666_34381898	0/0	c0001	2145	207	30	26	131	2	18	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/1	c0002	2145	112	20	19	51	8	13	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0003	2145	58	6	17	22	3	10	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0004	2145	35	17	13	0	3	2	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0005	2145	22	10	1	11	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0006	2145	4	4	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0007	2145	3	1	2	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0008	2145	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	1/0	c0009	2145	1	0	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0010	2145	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0011	2145	1	1	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0012	2145	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0013	2145	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0014	2145	1	0	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0015	2145	1	1	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0016	2145	1	0	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0017	2145	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	c0018	2145	1	0	0	0	0	1	copy fasta	MYORG	chr9	34361666	34381898
MYOT_chr5_137862860_137892851	1/1	c0001	1497	325	65	71	129	12	46	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	c0002	1497	9	9	0	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	c0003	1497	5	4	1	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	c0004	1497	5	5	0	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	c0005	1497	3	1	0	0	2	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	c0006	1497	2	2	0	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	c0007	1497	1	0	0	1	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	c0008	1497	1	1	0	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	c0009	1497	1	1	0	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOZ1_chr10_73626612_73646474	1/1	c0001	900	341	84	52	162	8	33	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	c0002	900	35	0	1	29	0	5	copy fasta	MYOZ1	chr10	73626612	73646474