JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYOZ1_chr10_73626612_73646474	0/0	c0003	900	3	2	1	0	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	c0004	900	1	0	0	0	0	1	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	c0005	900	1	1	0	0	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	c0006	900	1	0	0	1	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	c0007	900	1	1	0	0	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	c0008	900	1	0	0	0	0	1	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	c0009	900	1	1	0	0	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	c0010	900	1	1	0	0	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ2_chr4_119130832_119192789	1/1	c0001	795	342	68	63	161	16	32	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	c0002	795	37	19	4	8	2	4	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	c0003	795	9	0	0	9	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	c0004	795	2	2	0	0	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	c0005	795	1	0	0	1	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	c0006	795	1	0	0	1	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	c0007	795	1	1	0	0	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	c0008	795	1	0	1	0	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ3_chr5_150656251_150684368	0/1	c0001	756	324	64	67	145	16	31	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	c0002	756	45	26	0	19	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	c0003	756	17	0	0	14	0	3	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	c0004	756	3	2	1	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	1/0	c0005	756	1	0	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	c0006	756	1	1	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	c0007	756	1	0	0	1	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	c0008	756	1	0	0	1	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	c0009	756	1	1	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYPN_chr10_68104488_68217017	0/0	c0001	3963	63	7	7	45	1	3	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0002	3963	56	5	14	30	1	6	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0003	3963	27	2	9	13	0	3	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/1	c0004	3963	23	5	2	12	0	3	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0005	3963	22	0	3	14	3	2	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0006	3963	7	2	2	0	0	3	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0007	3963	7	0	0	7	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0008	3963	5	4	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0009	3963	5	5	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0010	3963	4	4	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0011	3963	4	3	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0012	3963	4	3	0	0	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0013	3963	3	0	0	0	1	2	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0014	3963	3	2	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0015	3963	3	3	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0016	3963	3	2	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0017	3963	3	2	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0018	3963	3	2	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0019	3963	3	0	1	2	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0020	3963	3	2	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0021	3963	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0022	3963	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0023	3963	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0024	3963	2	0	0	0	0	2	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0025	3963	2	0	2	0	0	0	copy fasta	MYPN	chr10	68104488	68217017