JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYPN_chr10_68104488_68217017	0/0	c0026	3963	2	0	1	0	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0027	3963	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0028	3963	2	0	0	2	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0029	3963	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0030	3963	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0031	3963	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0032	3963	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0033	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0034	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0035	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0036	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0037	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0038	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0039	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0040	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0041	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0042	3963	1	0	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0043	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0044	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0045	3963	1	0	0	0	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0046	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0047	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0048	3963	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0049	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0050	3963	1	0	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0051	3963	1	0	0	0	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0052	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0053	3963	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0054	3963	1	0	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0055	3963	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	1/0	c0056	3963	1	0	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0057	3963	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0058	3963	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0059	3963	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0060	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0061	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0062	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0063	3963	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	c0064	3963	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPOP_chr19_45885023_45907613	0/1	c0001	1200	240	40	30	135	9	25	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0002	1200	50	3	16	20	1	10	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	1/0	c0003	1200	38	17	7	0	6	7	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0004	1200	26	20	4	0	1	1	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0005	1201	11	1	2	7	0	1	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0006	1200	5	0	0	5	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0007	1200	5	0	5	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0008	1200	4	4	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0009	1201	4	1	1	2	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0010	1200	4	3	1	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0011	1200	3	0	0	3	0	0	copy fasta	MYPOP	chr19	45885023	45907613