JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYPOP_chr19_45885023_45907613	0/0	c0012	1200	3	0	2	0	1	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0013	1201	2	0	1	0	0	1	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0014	1201	2	0	1	0	0	1	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0015	1200	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0016	1200	1	1	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0017	1201	1	1	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0018	1200	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0019	1200	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0020	1200	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0021	1200	1	0	1	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0022	1200	1	0	1	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0023	1201	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0024	1200	1	1	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	c0025	1200	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYRFL_chr12_69820227_69964097	0/0	c0001	2733	71	28	8	29	1	5	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0002	2733	69	10	17	35	1	6	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	1/0	c0003	2733	59	21	9	21	1	6	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0004	2733	35	11	4	15	1	4	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0005	2733	16	0	3	13	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0006	2733	14	3	5	6	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0007	2733	9	0	2	4	1	2	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0008	2733	7	7	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0009	2733	6	0	5	0	0	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/1	c0010	2733	5	0	2	0	1	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0011	2733	4	0	3	0	0	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0012	2733	3	0	0	3	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0013	2733	3	3	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0014	2733	2	0	0	2	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0015	2733	2	1	1	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0016	2733	2	0	0	2	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0017	2733	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0018	2733	1	0	0	0	0	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0019	2733	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0020	2733	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0021	2733	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0022	2733	1	1	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0023	2733	1	1	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0024	2733	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0025	2733	1	0	0	0	0	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0026	2733	1	1	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0027	2733	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0028	2733	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0029	2733	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0030	2733	1	0	1	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	c0031	2733	1	1	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRF_chr11_61747636_61793518	1/1	c0001	3456	168	73	18	43	6	26	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0002	3456	121	13	29	62	8	9	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0003	3456	15	1	12	0	0	2	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0004	3456	4	0	4	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0005	3456	2	0	0	0	2	0	copy fasta	MYRF	chr11	61747636	61793518