JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYRF_chr11_61747636_61793518	0/0	c0006	3456	2	2	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0007	3456	2	0	0	0	0	2	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0008	3456	2	0	0	2	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0009	3456	2	2	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0010	3456	1	0	1	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0011	3456	1	0	0	1	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0012	3456	1	1	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0013	3456	1	0	0	1	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0014	3456	1	0	0	0	0	1	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0015	3456	1	1	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0016	3456	1	0	1	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0017	3456	1	0	0	0	0	1	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0018	3456	1	0	0	1	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0019	3456	1	1	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0020	3456	1	0	0	0	0	1	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	c0021	3456	1	0	1	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRIP_chr3_39804609_40265321	0/1	c0001	2580	79	27	11	33	3	4	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0002	2580	25	4	7	7	2	5	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0003	2580	9	0	0	9	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0004	2580	7	7	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0005	2580	6	4	2	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0006	2580	6	6	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0007	2580	6	2	0	1	1	2	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0008	2580	5	3	2	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0009	2580	5	0	0	2	0	3	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0010	2580	3	3	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0011	2580	3	3	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0012	2580	3	3	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0013	2580	2	0	0	0	0	2	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0014	2580	2	2	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0015	2580	2	1	0	1	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0016	2580	2	2	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0017	2580	1	1	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0018	2580	1	1	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	1/0	c0019	2580	1	0	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0020	2580	1	1	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	c0021	2580	1	0	0	1	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYSM1_chr1_58649743_58705062	0/0	c0001	2487	139	21	24	75	5	14	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/1	c0002	2487	97	11	14	58	3	10	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0003	2487	59	0	7	42	1	9	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0004	2487	58	39	15	0	0	4	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	1/0	c0005	2487	40	12	5	17	3	2	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0006	2487	6	6	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0007	2487	3	3	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0008	2487	2	2	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0009	2487	2	0	1	0	0	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0010	2487	1	1	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0011	2487	1	1	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0012	2487	1	0	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	c0013	2487	1	0	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062