JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AP1S1_chr7_101149476_101166276	0/0	c0003	477	8	0	0	8	0	0	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	c0004	477	5	0	0	5	0	0	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	c0005	477	1	0	1	0	0	0	copy fasta	AP1S1	chr7	101149476	101166276
AP1S2_chrX_15820806_15859813	1/1	c0001	483	317	69	54	153	9	30	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	c0002	483	1	1	0	0	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S3_chr2_223750326_223842582	1/1	c0001	465	332	81	52	155	6	36	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	c0002	465	3	3	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	c0003	465	2	1	0	1	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	c0004	465	1	0	1	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	c0005	465	1	1	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	c0006	465	1	0	1	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP2A1_chr19_49762001_49812114	1/1	c0001	2868	324	80	61	125	12	44	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0002	2868	4	0	0	3	0	1	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0003	2868	3	0	2	0	1	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0004	2868	2	2	0	0	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0005	2868	2	0	0	2	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0006	2868	1	0	0	0	0	1	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0007	2868	1	0	0	0	1	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0008	2868	1	0	0	1	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0009	2868	1	0	0	1	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0010	2868	1	0	0	1	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0011	2868	1	0	1	0	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	c0012	2868	1	0	0	1	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A2_chr11_920870_1017240	0/0	c0001	2820	120	22	30	46	9	13	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	1/1	c0002	2820	89	23	18	32	2	12	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0003	2820	37	18	1	15	0	3	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0004	2820	5	4	1	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0005	2820	4	0	0	3	0	1	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0006	2820	4	1	0	1	1	1	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0007	2820	1	1	0	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0008	2820	1	0	1	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0009	2820	1	0	0	0	0	1	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0010	2820	1	1	0	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0011	2820	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0012	2820	1	0	0	0	0	1	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0013	2820	1	0	1	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0014	2845	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	c0015	2820	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2B1_chr17_35582322_35731413	1/1	c0001	2856	219	40	39	104	10	24	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	c0002	2856	128	40	21	55	2	10	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	c0003	2856	12	0	0	12	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	c0004	2856	9	3	4	0	2	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	c0005	2856	1	1	0	0	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	c0006	2856	1	1	0	0	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	c0007	2856	1	0	0	1	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	c0008	2856	1	1	0	0	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2M1_chr3_184169855_184189091	1/0	c0001	1308	360	55	63	192	12	37	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/0	c0002	1308	31	27	4	0	0	0	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/1	c0003	1308	24	4	6	0	2	11	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/0	c0004	1308	6	5	1	0	0	0	copy fasta	AP2M1	chr3	184169855	184189091