JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYT1L_chr2_1784113_2336275	0/0	c0001	3561	17	4	0	10	1	2	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/1	c0002	3561	17	5	0	7	0	4	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0003	3561	12	7	0	3	1	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0004	3561	11	5	0	1	1	4	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0005	3561	9	9	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0006	3561	6	0	0	4	0	2	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0007	3561	4	1	1	2	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0008	3561	4	4	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0009	3561	3	3	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0010	3561	2	0	0	2	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0011	3555	2	2	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0012	3561	2	1	1	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0013	3561	2	2	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0014	3561	1	0	0	0	1	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0015	3561	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0016	3561	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0017	3561	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0018	3561	1	0	0	0	0	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0019	3561	1	0	0	1	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0020	3561	1	0	0	0	0	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0021	3561	1	0	0	1	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0022	3561	1	0	0	0	0	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0023	3561	1	0	0	1	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0024	3561	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	c0025	3561	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	1/0	c0026	3561	1	0	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1_chr20_64159452_64247253	0/1	c0001	3366	129	39	32	36	7	14	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0002	3366	43	28	8	0	1	6	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0003	3366	11	2	2	3	3	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0004	3366	11	1	3	4	1	2	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0005	3366	6	0	0	0	0	6	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0006	3366	4	2	1	0	0	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0007	3366	3	0	3	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0008	3366	2	2	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0009	3366	2	0	2	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0010	3363	2	1	0	0	0	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0011	3366	2	2	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0012	3366	1	0	0	1	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0013	3366	1	1	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0014	3366	1	1	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0015	3366	1	1	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0016	3366	1	0	0	1	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0017	3366	1	0	0	0	0	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0018	3366	1	0	1	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	c0019	3366	1	0	0	1	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYZAP_chr15_57586904_57690364	0/1	c0001	1401	175	47	38	69	5	15	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	c0002	1401	82	19	5	52	0	6	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	1/0	c0003	1401	78	23	24	15	9	6	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	c0004	1401	8	1	0	6	0	1	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	c0005	1401	3	2	0	0	0	1	copy fasta	MYZAP	chr15	57586904	57690364