JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MYZAP_chr15_57586904_57690364	0/0	c0006	1401	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	c0007	1401	1	0	0	0	0	1	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	c0008	1401	1	0	1	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	c0009	1401	1	0	0	1	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	c0010	1401	1	0	0	1	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	c0011	1401	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MZB1_chr5_139382467_139394913	1/1	c0001	570	349	84	64	147	14	38	copy fasta	MZB1	chr5	139382467	139394913
MZB1_chr5_139382467_139394913	0/0	c0002	570	3	0	0	3	0	0	copy fasta	MZB1	chr5	139382467	139394913
MZB1_chr5_139382467_139394913	0/0	c0003	570	1	1	0	0	0	0	copy fasta	MZB1	chr5	139382467	139394913
MZB1_chr5_139382467_139394913	0/0	c0004	570	1	1	0	0	0	0	copy fasta	MZB1	chr5	139382467	139394913
MZF1_chr19_58556932_58578335	1/0	c0001	2205	140	8	23	87	6	15	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/1	c0002	2205	87	7	18	49	7	5	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0003	2205	44	15	13	8	1	7	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0004	2205	43	1	12	24	2	4	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0005	2205	34	29	2	2	0	1	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0006	2205	9	9	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0007	2205	8	0	0	8	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0008	2205	5	0	0	5	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0009	2205	5	0	0	4	0	1	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0010	2205	4	3	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0011	2205	3	3	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0012	2205	2	2	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0013	2205	2	2	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0014	2205	2	2	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0015	2205	2	0	0	0	0	2	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0016	2205	2	2	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0017	2205	2	1	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0018	2205	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0019	2205	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0020	2205	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0021	2205	1	0	0	0	0	1	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0022	2205	1	0	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0023	2205	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0024	2205	1	0	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0025	2205	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0026	2205	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0027	2205	1	0	0	0	0	1	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0028	2205	1	0	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0029	2205	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0030	2205	1	0	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0031	2205	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0032	2205	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0033	2205	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0034	2205	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0035	2205	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0036	2205	1	0	0	0	0	1	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	c0037	2205	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZT1_chr13_72703367_72732629	0/1	c0001	249	310	36	62	155	13	43	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	1/0	c0002	249	51	40	1	5	1	3	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	c0003	249	17	16	1	0	0	0	copy fasta	MZT1	chr13	72703367	72732629