JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAA11_chr4_79311647_79331061	0/0	c0002	690	4	4	0	0	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	c0003	690	4	4	0	0	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	c0004	690	2	0	0	2	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	c0005	690	2	2	0	0	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	c0006	690	1	0	0	1	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA15_chr4_139296505_139396384	1/1	c0001	2601	313	63	56	143	14	35	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	c0002	2601	16	14	2	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	c0003	2601	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	c0004	2601	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	c0005	2601	1	0	0	0	0	1	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	c0006	2601	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	c0007	2601	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA16_chr13_41306267_41382030	0/0	c0001	2595	301	55	57	149	11	29	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0002	2595	21	5	3	12	0	1	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0003	2595	16	14	2	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0004	2595	2	0	0	2	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0005	2595	1	0	0	0	0	1	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0006	2595	1	0	0	1	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0007	2595	1	0	1	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0008	2568	1	0	0	0	0	1	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0009	2595	1	0	0	1	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0010	2595	1	0	1	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0011	2595	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0012	2595	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0013	2595	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0014	2595	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0015	2595	1	0	0	0	1	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0016	2595	1	0	0	1	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0017	2595	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	c0018	2595	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA20_chr20_20012362_20038655	1/1	c0001	537	377	88	61	171	12	43	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	c0002	537	52	4	11	32	2	3	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	c0003	537	7	0	0	7	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	c0004	537	2	2	0	0	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA25_chr12_112021689_112113783	1/1	c0001	2919	214	58	35	79	5	35	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	c0002	2919	87	7	14	63	0	3	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	c0003	2919	33	25	7	0	1	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	c0004	2919	4	0	0	4	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	c0005	2919	1	1	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	c0006	2919	1	0	0	1	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	c0007	2919	1	0	0	1	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	c0008	2919	1	1	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA30_chr14_57385586_57420906	1/1	c0001	1089	246	79	45	90	4	26	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	c0002	1089	3	3	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	c0003	1089	2	0	0	2	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	c0004	1089	2	0	2	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	c0005	1089	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	c0006	1089	1	0	1	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	c0007	1089	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA35_chr9_85936146_86030462	1/1	c0001	2178	279	78	41	125	8	25	copy fasta	NAA35	chr9	85936146	86030462