JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAA35_chr9_85936146_86030462	0/0	c0002	2178	2	2	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	c0003	2178	2	0	0	1	0	1	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	c0004	2178	2	2	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	c0005	2178	1	0	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	c0006	2178	1	0	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	c0007	2178	1	0	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA38_chr17_7851685_7862559	1/1	c0001	378	179	41	51	38	17	30	copy fasta	NAA38	chr17	7851685	7862559
NAA38_chr17_7851685_7862559	0/0	c0002	378	125	13	7	97	1	7	copy fasta	NAA38	chr17	7851685	7862559
NAA38_chr17_7851685_7862559	0/0	c0003	378	116	37	20	48	0	11	copy fasta	NAA38	chr17	7851685	7862559
NAA38_chr17_7851685_7862559	0/0	c0004	378	1	0	0	1	0	0	copy fasta	NAA38	chr17	7851685	7862559
NAA38_chr17_7851685_7862559	0/0	c0005	378	1	1	0	0	0	0	copy fasta	NAA38	chr17	7851685	7862559
NAA40_chr11_63934002_63962319	1/0	c0001	714	212	49	39	89	10	24	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/1	c0002	714	49	3	13	12	6	14	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	c0003	714	19	17	1	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	c0004	714	12	11	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	c0005	714	3	3	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	c0006	714	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	c0007	714	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	c0008	714	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA50_chr3_113711458_113751249	1/1	c0001	510	396	88	66	187	14	39	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	c0002	510	3	0	2	0	0	1	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	c0003	510	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA60_chr16_3438680_3491953	0/1	c0001	729	233	64	43	96	8	21	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	1/0	c0002	729	136	26	28	59	4	18	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	c0003	729	3	3	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	c0004	729	1	0	1	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	c0005	729	1	0	0	0	0	1	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	c0006	729	1	0	0	1	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	c0007	729	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA80_chr3_50291402_50304405	1/1	c0001	861	258	63	54	87	13	39	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	c0002	861	111	16	15	79	0	1	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	c0003	861	3	3	0	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	c0004	861	1	0	0	0	1	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	c0005	861	1	1	0	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	c0006	861	1	1	0	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	c0007	861	1	0	1	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	c0008	861	1	0	0	1	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	c0009	861	1	0	0	1	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAAA_chr4_75908660_75946013	0/0	c0001	1080	156	64	24	38	5	25	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	1/1	c0002	1080	114	1	18	83	5	5	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0003	1080	93	9	22	52	3	7	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0004	1080	9	0	1	8	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0005	1080	5	3	2	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0006	1080	4	4	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0007	1080	4	4	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0008	1080	3	3	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0009	1080	3	0	3	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0010	1080	2	2	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0011	1080	1	1	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0012	1080	1	1	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013