JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAAA_chr4_75908660_75946013	0/0	c0013	1080	1	0	0	1	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0014	1080	1	0	0	0	0	1	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0015	1080	1	0	0	0	1	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0016	1080	1	0	0	1	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	c0017	1080	1	0	0	1	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAALAD2_chr11_90129663_90197894	1/1	c0001	2223	148	25	29	70	6	16	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0002	2223	117	16	17	67	5	12	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0003	2223	40	17	7	2	1	13	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0004	2223	14	1	3	9	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0005	2223	13	13	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0006	2223	6	5	1	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0007	2223	6	5	1	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0008	2223	3	3	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0009	2223	2	0	0	0	0	2	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0010	2223	2	2	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0011	2223	2	0	0	2	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0012	2223	1	0	0	1	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0013	2223	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0014	2223	1	1	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0015	2223	1	0	0	1	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0016	2223	1	0	1	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0017	2223	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0018	2223	1	0	1	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0019	2223	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0020	2223	1	1	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0021	2223	1	1	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	c0022	2223	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALADL1_chr11_65039818_65063553	1/1	c0001	2223	285	76	47	123	15	22	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0002	2223	37	13	8	4	1	11	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0003	2223	21	0	1	20	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0004	2223	6	5	1	0	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0005	2223	5	0	3	0	2	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0006	2223	3	0	0	3	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0007	2223	2	2	0	0	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0008	2223	2	0	0	1	0	1	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0009	2223	1	0	0	0	0	1	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0010	2223	1	1	0	0	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0011	2223	1	0	0	0	0	1	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0012	2213	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0013	2223	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0014	2223	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0015	2223	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0016	2223	1	1	0	0	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0017	2223	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0018	2223	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	c0019	2223	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL2_chr3_174854334_175815548	0/0	c0001	2388	9	8	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0002	2388	6	4	2	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0003	2388	6	4	2	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0004	2388	5	2	3	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548