JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAALADL2_chr3_174854334_175815548	0/0	c0005	2388	5	4	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0006	2388	4	3	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0007	2388	4	2	2	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0008	2388	3	2	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0009	2388	3	1	2	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0010	2388	2	1	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0011	2388	2	1	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0012	2388	2	1	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0013	2388	2	2	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0014	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0015	2388	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0016	2388	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0017	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0018	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0019	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0020	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0021	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0022	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0023	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	c0024	2388	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAB1_chr2_190644083_190697766	1/1	c0001	1464	360	82	61	161	14	40	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	c0002	1464	7	0	1	5	0	1	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	c0003	1464	2	2	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	c0004	1464	2	0	0	2	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	c0005	1464	1	1	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	c0006	1464	1	0	0	0	0	1	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	c0007	1464	1	1	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB2_chr12_57084114_57100476	1/1	c0001	1578	382	90	79	159	17	35	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	c0002	1578	8	1	3	0	1	3	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	c0003	1578	2	2	0	0	0	0	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	c0004	1578	1	0	0	0	0	1	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	c0005	1578	1	1	0	0	0	0	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	c0006	1578	1	0	0	1	0	0	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	c0007	1578	1	0	0	0	0	1	copy fasta	NAB2	chr12	57084114	57100476
NABP1_chr2_191673136_191691943	1/1	c0001	615	393	93	68	180	10	40	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	c0002	615	1	1	0	0	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP2_chr12_56219342_56234854	1/1	c0001	636	410	92	78	180	18	40	copy fasta	NABP2	chr12	56219342	56234854
NABP2_chr12_56219342_56234854	0/0	c0002	636	2	2	0	0	0	0	copy fasta	NABP2	chr12	56219342	56234854
NACA2_chr17_61585421_61596219	1/0	c0001	648	332	82	68	141	11	29	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/1	c0002	648	53	5	11	18	4	14	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	c0003	648	8	8	0	0	0	0	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	c0004	648	3	0	0	0	1	2	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	c0005	648	1	0	0	0	0	1	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	c0006	648	1	0	0	1	0	0	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	c0007	648	1	0	1	0	0	0	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	c0008	648	1	1	0	0	0	0	copy fasta	NACA2	chr17	61585421	61596219
NACAD_chr7_45075437_45093969	1/0	c0001	4689	129	11	14	85	4	14	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0002	4689	37	1	12	16	2	6	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/1	c0003	4689	34	0	4	26	1	2	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0004	4689	24	20	2	0	0	2	copy fasta	NACAD	chr7	45075437	45093969