JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NACAD_chr7_45075437_45093969	0/0	c0005	4689	24	1	12	6	2	3	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0006	4689	22	1	10	11	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0007	4689	10	8	2	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0008	4689	9	8	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0009	4689	8	1	1	1	0	5	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0010	4689	7	0	6	0	1	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0011	4449	6	6	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0012	4569	5	0	2	0	1	2	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0013	4689	4	4	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0014	4689	4	4	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0015	4689	3	3	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0016	4689	3	0	1	1	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0017	4689	3	0	3	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0018	4689	2	0	0	2	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0019	4569	2	0	0	2	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0020	4569	2	0	0	1	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0021	4449	2	2	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0022	4689	2	2	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0023	4689	2	0	0	2	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0024	4689	2	0	1	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0025	4689	1	0	0	0	1	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0026	4689	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0027	4569	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0028	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0029	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0030	4689	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0031	4689	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0032	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0033	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0034	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0035	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0036	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0037	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0038	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0039	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0040	4569	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0041	4569	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0042	4689	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0043	4209	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0044	4569	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0045	4689	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0046	4689	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0047	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0048	4689	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0049	4689	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0050	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0051	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0052	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0053	4449	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0054	4809	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969