JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NACAD_chr7_45075437_45093969	0/0	c0055	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0056	4569	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0057	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0058	4689	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0059	4689	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0060	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0061	4689	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0062	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0063	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0064	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0065	4569	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0066	4569	1	0	0	0	1	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0067	4809	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0068	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0069	4689	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0070	4329	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0071	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0072	4689	1	0	0	0	1	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0073	4449	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0074	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0075	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0076	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0077	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0078	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0079	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0080	4689	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0081	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0082	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0083	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0084	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0085	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0086	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0087	4689	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	c0088	4689	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACA_chr12_56707427_56730299	0/0	c0001	6168	154	21	33	72	6	22	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	1/0	c0002	6237	89	9	19	50	2	8	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0003	6168	12	7	2	0	3	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0004	6099	12	11	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0005	6237	10	9	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0006	6168	8	8	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0007	6237	5	0	4	0	1	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0008	6168	4	0	0	4	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0009	6168	4	0	0	4	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0010	6168	4	0	1	0	1	2	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0011	6168	3	3	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0012	6168	3	2	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0013	6237	3	3	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0014	6168	3	3	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0015	6168	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0016	6099	2	0	2	0	0	0	copy fasta	NACA	chr12	56707427	56730299