JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AP2M1_chr3_184169855_184189091	0/0	c0005	1308	1	1	0	0	0	0	copy fasta	AP2M1	chr3	184169855	184189091
AP2S1_chr19_46833167_46855846	1/1	c0001	429	424	98	80	178	18	48	copy fasta	AP2S1	chr19	46833167	46855846
AP3B1_chr5_77997326_78299698	0/1	c0001	3285	99	21	25	35	3	14	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0002	3285	42	0	12	23	2	5	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	1/0	c0003	3285	37	3	2	24	1	6	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0004	3285	12	11	1	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0005	3285	9	8	1	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0006	3285	7	1	3	0	2	1	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0007	3282	6	6	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0008	3282	4	4	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0009	3282	2	2	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0010	3285	1	0	0	1	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0011	3285	1	1	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0012	3285	1	1	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0013	3285	1	1	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0014	3285	1	1	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0015	3285	1	0	1	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0016	3285	1	0	0	1	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	c0017	3285	1	0	1	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B2_chr15_82654281_82714875	1/1	c0001	3306	319	62	62	150	16	27	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0002	3306	14	11	1	0	1	1	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0003	3300	6	0	0	6	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0004	3306	5	0	0	5	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0005	3306	5	5	0	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0006	3306	4	4	0	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0007	3306	2	0	0	2	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0008	3306	2	2	0	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0009	3306	1	1	0	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0010	3306	1	0	1	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0011	3306	1	1	0	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0012	3306	1	0	0	1	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0013	3306	1	0	0	1	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0014	3306	1	0	0	0	0	1	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0015	3306	1	0	0	0	1	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0016	3306	1	0	0	1	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0017	3306	1	0	0	0	0	1	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0018	3306	1	0	0	0	0	1	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	c0019	3306	1	0	0	0	0	1	copy fasta	AP3B2	chr15	82654281	82714875
AP3D1_chr19_2095988_2156566	1/0	c0001	3648	182	49	30	77	4	21	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/1	c0002	3648	68	1	22	28	7	9	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0003	3648	53	25	0	23	2	3	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0004	3648	37	1	6	24	3	3	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0005	3648	14	0	6	8	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0006	3648	11	1	0	10	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0007	3648	10	1	1	0	2	6	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0008	3648	6	6	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0009	3648	5	5	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0010	3648	4	1	3	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0011	3648	2	2	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0012	3648	2	2	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566