JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NACA_chr12_56707427_56730299	0/0	c0017	6168	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0018	6168	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0019	6237	2	2	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0020	6237	2	2	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0021	6237	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0022	6168	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0023	6237	2	2	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0024	6168	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0025	6168	1	0	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0026	6936	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0027	6099	1	0	0	0	0	1	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0028	6168	1	0	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0029	6168	1	0	0	0	1	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0030	6099	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0031	6168	1	0	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0032	6168	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0033	6237	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0034	6168	1	0	0	0	0	1	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0035	6202	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0036	6168	1	0	0	0	0	1	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0037	6168	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0038	6169	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0039	6160	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0040	6168	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0041	6168	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0042	6237	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0043	6168	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/1	c0044	6168	1	0	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0045	6306	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0046	6250	1	0	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0047	6099	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0048	6237	1	0	0	0	0	1	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0049	6237	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0050	6168	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0051	6099	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0052	6099	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0053	6168	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0054	6237	1	0	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0055	6168	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0056	6099	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	c0057	6651	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACC1_chr19_13113264_13146147	1/1	c0001	1584	307	85	63	105	12	40	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	c0002	1584	5	0	0	5	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	c0003	1584	5	5	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	c0004	1584	3	1	0	0	0	2	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	c0005	1584	2	0	0	2	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	c0006	1584	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	c0007	1584	1	0	1	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	c0008	1584	1	0	0	1	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	c0009	1584	1	0	0	1	0	0	copy fasta	NACC1	chr19	13113264	13146147