JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NACC2_chr9_136001537_136100289	0/0	c0001	1764	63	8	10	32	2	11	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/1	c0002	1764	51	9	15	14	3	9	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0003	1764	47	12	12	13	4	6	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	1/0	c0004	1764	45	4	5	24	5	6	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0005	1764	43	3	12	23	1	4	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0006	1764	11	11	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0007	1764	10	6	4	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0008	1764	7	7	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0009	1764	6	6	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0010	1764	6	0	3	3	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0011	1764	5	0	0	5	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0012	1764	5	0	0	5	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0013	1764	3	3	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0014	1764	3	0	1	2	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0015	1764	3	3	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0016	1764	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0017	1764	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0018	1764	2	0	0	2	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0019	1764	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0020	1764	2	0	0	0	0	2	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0021	1758	2	0	2	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0022	1764	2	1	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0023	1764	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0024	1764	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0025	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0026	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0027	1764	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0028	1764	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0029	1764	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0030	1764	1	0	0	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0031	1758	1	0	0	0	1	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0032	1758	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0033	1758	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0034	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0035	1764	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0036	1764	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0037	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0038	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0039	1764	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0040	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0041	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0042	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0043	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0044	1764	1	0	0	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0045	1764	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	c0046	1764	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NADK2_chr5_36187589_36246925	1/1	c0001	1329	345	52	68	180	10	33	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	c0002	1329	20	17	2	0	0	1	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	c0003	1329	10	9	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	c0004	1329	5	5	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925