JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NADK2_chr5_36187589_36246925	0/0	c0005	1329	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	c0006	1329	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	c0007	1329	1	0	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	c0008	1329	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK_chr1_1746232_1783470	1/0	c0001	1341	147	57	9	69	1	10	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/1	c0002	1344	110	4	26	65	7	7	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0003	1341	103	4	18	58	6	17	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0004	1344	13	0	6	0	1	6	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0005	1344	9	9	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0006	1341	6	0	0	6	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0007	1347	5	0	0	1	0	4	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0008	1341	4	1	1	0	0	2	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0009	1338	3	3	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0010	1338	3	2	0	0	1	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0011	1344	2	0	0	2	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0012	1341	2	0	0	0	0	2	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0013	1344	1	0	0	0	1	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0014	1341	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0015	1341	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0016	1341	1	0	0	1	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0017	1341	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0018	1344	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	c0019	1344	1	0	0	0	1	0	copy fasta	NADK	chr1	1746232	1783470
NADSYN1_chr11_71448203_71506816	0/0	c0001	2121	104	13	13	63	5	10	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/1	c0002	2121	100	9	28	50	5	7	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0003	2121	66	11	19	23	1	12	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0004	2121	34	9	2	16	1	6	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0005	2121	10	10	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0006	2121	8	7	1	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0007	2121	5	5	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0008	2121	3	3	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0009	2121	3	3	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0010	2121	3	3	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0011	2121	2	2	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0012	2121	2	1	0	0	0	1	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0013	2121	2	0	0	0	0	2	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0014	2121	1	0	0	1	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0015	2121	1	0	1	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0016	2121	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0017	2121	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0018	2121	1	0	0	1	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0019	2121	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0020	2121	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	1/0	c0021	2121	1	0	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0022	2121	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0023	2121	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0024	2121	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	c0025	2121	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NAE1_chr16_66797878_66835976	1/1	c0001	1605	365	90	68	149	16	40	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	c0002	1605	5	4	1	0	0	0	copy fasta	NAE1	chr16	66797878	66835976