JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAE1_chr16_66797878_66835976	0/0	c0003	1605	3	3	0	0	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	c0004	1605	1	0	1	0	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	c0005	1605	1	0	0	1	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	c0006	1605	1	1	0	0	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAF1_chr4_163123669_163171890	0/0	c0001	1485	245	50	58	92	13	32	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	1/1	c0002	1485	79	14	16	37	3	7	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0003	1485	7	6	1	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0004	1485	2	0	2	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0005	1485	2	2	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0006	1485	2	2	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0007	1485	1	0	0	0	0	1	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0008	1485	1	1	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0009	1485	1	0	1	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0010	1485	1	0	0	1	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0011	1485	1	1	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0012	1485	1	1	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	c0013	1485	1	1	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAGA_chr22_42053334_42075812	0/0	c0001	1236	282	51	52	144	8	27	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	1/1	c0002	1236	127	39	26	37	7	16	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0003	1236	1	0	0	0	0	1	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0004	1236	1	0	0	0	1	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0005	1236	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0006	1236	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0007	1236	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0008	1236	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0009	1236	1	0	1	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0010	1236	1	0	1	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	c0011	1236	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGK_chr2_71063648_71084808	0/0	c0001	1035	285	60	33	154	9	29	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0002	1035	64	10	16	32	3	3	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	1/1	c0003	1035	52	13	26	0	3	8	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0004	1035	14	11	3	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0005	1035	9	0	3	0	1	5	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0006	1035	4	0	0	4	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0007	1035	2	0	0	0	0	2	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0008	1035	2	0	0	2	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0009	1035	1	0	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0010	1035	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0011	1035	1	0	0	1	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0012	1035	1	0	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0013	1035	1	0	0	0	0	1	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0014	1035	1	0	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0015	1035	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0016	1035	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0017	1035	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	c0018	1035	1	0	0	1	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGLU_chr17_42531241_42549449	0/1	c0001	2232	358	48	67	186	15	41	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0002	2232	40	34	5	0	1	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0003	2232	13	12	1	0	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0004	2232	3	3	0	0	0	0	copy fasta	NAGLU	chr17	42531241	42549449