JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAGLU_chr17_42531241_42549449	0/0	c0005	2232	1	0	0	1	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0006	2232	1	0	0	0	0	1	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0007	2232	1	0	1	0	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0008	2232	1	0	0	0	0	1	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0009	2232	1	1	0	0	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	1/0	c0010	2232	1	0	0	0	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0011	2232	1	0	0	1	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	c0012	2232	1	0	0	0	0	1	copy fasta	NAGLU	chr17	42531241	42549449
NAGPA_chr16_5019844_5038935	0/1	c0001	1548	289	45	51	144	9	39	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0002	1548	88	10	20	43	5	10	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0003	1548	19	17	1	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0004	1548	13	0	2	11	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0005	1548	10	10	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0006	1548	6	6	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	1/0	c0007	1548	2	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0008	1548	2	0	1	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0009	1548	1	0	0	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0010	1548	1	0	0	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0011	1548	1	0	1	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0012	1548	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0013	1548	1	0	1	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0014	1548	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0015	1548	1	0	0	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0016	1548	1	0	0	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0017	1548	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0018	1548	1	0	1	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0019	1548	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0020	1548	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	c0021	1548	1	0	0	0	0	1	copy fasta	NAGPA	chr16	5019844	5038935
NAGS_chr17_43999622_44014068	1/1	c0001	1605	335	75	65	148	10	35	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	c0002	1605	29	9	8	7	2	3	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	c0003	1605	5	5	0	0	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	c0004	1605	3	0	0	3	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	c0005	1605	3	0	0	3	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	c0006	1605	2	0	0	2	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	c0007	1605	1	0	0	1	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	c0008	1605	1	0	1	0	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	c0009	1605	1	1	0	0	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAIF1_chr9_128056233_128072320	0/1	c0001	984	311	87	59	118	16	30	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	c0002	984	3	3	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	1/0	c0003	984	3	2	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	c0004	984	1	0	1	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIP_chr5_70963166_71030339	0/0	c0001	4212	63	11	17	23	3	9	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0002	4212	24	21	2	0	0	1	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0003	4212	22	2	6	4	2	8	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0004	4212	14	5	7	0	2	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0005	4212	3	0	2	0	1	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0006	4212	3	0	0	3	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0007	4212	2	0	0	2	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0008	3544	2	2	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339