JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAIP_chr5_70963166_71030339	0/0	c0009	4212	1	0	0	1	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0010	4212	1	0	0	1	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0011	4212	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0012	4212	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0013	4212	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0014	4212	1	0	0	1	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	c0015	4212	1	0	0	1	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/1	c0016	4212	1	0	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NALCN_chr13_101048776_101421508	0/1	c0001	5217	51	29	8	11	0	2	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0002	5217	35	2	5	18	2	8	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	1/0	c0003	5217	29	1	12	13	1	1	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0004	5217	8	3	1	1	0	3	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0005	5217	6	5	1	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0006	5217	6	3	2	0	0	1	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0007	5217	5	0	4	0	1	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0008	5217	5	0	0	3	1	1	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0009	5217	3	3	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0010	5217	3	3	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0011	5217	3	0	1	0	2	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0012	5217	2	2	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0013	5217	2	0	1	0	1	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0014	5217	2	2	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0015	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0016	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0017	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0018	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0019	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0020	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0021	5217	1	0	1	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0022	5217	1	0	1	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0023	5217	1	0	0	0	1	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0024	5217	1	0	1	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0025	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0026	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0027	5217	1	0	0	0	0	1	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0028	5217	1	0	0	0	0	1	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0029	5217	1	0	0	0	1	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	c0030	5217	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALF1_chr13_107158510_107872496	0/0	c0001	1377	92	43	16	23	3	7	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	c0002	1377	23	16	2	4	1	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	c0003	1365	9	0	1	7	0	1	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	c0004	1377	2	0	2	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	c0005	1377	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	c0006	1377	1	0	1	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF2_chrX_69499326_69537508	0/1	c0001	1419	215	49	25	122	3	15	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	1/0	c0002	1419	66	7	16	18	8	16	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0003	1419	10	9	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0004	1419	7	6	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0005	1419	3	2	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0006	1419	2	0	0	2	0	0	copy fasta	NALF2	chrX	69499326	69537508