JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NALF2_chrX_69499326_69537508	0/0	c0007	1419	2	0	2	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0008	1432	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0009	1425	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0010	1420	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0011	1419	1	1	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0012	1420	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0013	1419	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0014	1420	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0015	1419	1	0	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0016	1418	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0017	1419	1	0	0	0	0	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0018	1418	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0019	1419	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0020	1419	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0021	1421	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0022	1419	1	0	0	0	0	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0023	1420	1	0	0	0	0	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	c0024	1421	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NAMPT_chr7_106243298_106289983	0/0	c0001	1476	257	58	46	119	6	28	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	1/1	c0002	1476	74	31	14	13	2	12	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	c0003	1476	4	0	0	4	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	c0004	1476	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NANOGNB_chr12_7760216_7779121	1/1	c0001	567	405	60	74	212	16	41	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	c0002	567	41	25	8	3	0	5	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	c0003	567	4	4	0	0	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	c0004	567	4	4	0	0	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	c0005	567	3	3	0	0	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	c0006	567	2	2	0	0	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	c0007	567	1	0	0	1	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGP8_chr15_35078410_35090295	0/1	c0001	918	196	27	44	99	6	19	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	1/0	c0002	918	120	15	17	67	7	13	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0003	918	76	30	3	42	1	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0004	918	41	1	10	21	2	7	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0005	916	16	11	5	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0006	918	7	7	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0007	918	7	1	3	0	2	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0008	918	4	4	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0009	918	3	0	0	2	0	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0010	918	1	0	1	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0011	918	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0012	918	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0013	918	1	0	0	0	0	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0014	918	1	0	1	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	c0015	918	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOG_chr12_7784402_7804146	1/1	c0001	918	290	52	36	177	5	18	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0002	918	74	21	26	13	5	9	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0003	918	32	9	4	14	0	5	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0004	918	27	5	10	0	4	8	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0005	918	3	3	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0006	918	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146