JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NANOG_chr12_7784402_7804146	0/0	c0007	918	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0008	918	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0009	918	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0010	918	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0011	918	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0012	918	1	0	0	0	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	c0013	918	1	0	0	0	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOS1_chr10_119024714_119038730	1/1	c0001	879	340	71	62	156	11	38	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0002	880	27	2	7	13	0	5	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0003	879	17	17	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0004	879	5	0	1	0	4	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0005	882	4	1	0	3	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0006	879	3	3	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0007	883	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0008	879	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0009	879	1	0	0	0	1	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0010	879	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0011	846	1	0	0	0	0	1	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0012	846	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0013	879	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	c0014	879	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS2_chr19_45908214_45919778	1/1	c0001	417	440	90	80	208	14	46	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	c0002	417	1	0	0	1	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	c0003	417	1	0	0	1	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS3_chr19_13872134_13885757	1/1	c0001	579	229	19	58	111	12	27	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	c0002	579	128	49	15	50	4	10	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	c0003	597	13	11	1	0	0	1	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	c0004	582	8	8	0	0	0	0	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	c0005	579	1	0	0	1	0	0	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	c0006	598	1	1	0	0	0	0	copy fasta	NANOS3	chr19	13872134	13885757
NANP_chr20_25607935_25629014	1/1	c0001	747	381	87	78	152	16	46	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	c0002	747	2	2	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	c0003	747	1	1	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANS_chr9_98051732_98088077	1/1	c0001	1080	119	4	19	74	5	15	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0002	1080	85	17	22	45	0	1	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0003	1080	82	41	13	12	3	13	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0004	1080	21	4	11	2	2	2	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0005	1080	2	2	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0006	1080	1	0	0	1	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0007	1080	1	1	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0008	1080	1	0	1	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0009	1080	1	1	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0010	1080	1	1	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0011	1080	1	1	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0012	1080	1	0	0	1	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0013	1080	1	0	0	1	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	c0014	1080	1	0	0	0	0	1	copy fasta	NANS	chr9	98051732	98088077
NAP1L1_chr12_76031585_76089685	0/1	c0001	1176	230	28	38	137	6	20	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	c0002	1176	93	61	16	3	5	8	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	1/0	c0003	1176	32	6	16	0	3	6	copy fasta	NAP1L1	chr12	76031585	76089685