JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAP1L1_chr12_76031585_76089685	0/0	c0004	1176	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L2_chrX_73207299_73219851	1/1	c0001	1383	263	66	51	108	11	25	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	c0002	1383	7	6	1	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	c0003	1383	4	4	0	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	c0004	1380	2	2	0	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	c0005	1383	2	0	0	2	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	c0006	1383	1	0	0	0	0	1	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	c0007	1380	1	1	0	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	c0008	1383	1	0	0	1	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	c0009	1386	1	0	0	1	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L3_chrX_93665930_93678578	1/0	c0001	1521	164	41	17	84	9	12	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/1	c0002	1521	152	25	35	69	3	19	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	c0003	1500	8	0	7	0	0	1	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	c0004	1521	6	6	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	c0005	1521	3	3	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	c0006	1521	1	0	0	1	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	c0007	1521	1	1	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	c0008	1522	1	0	0	1	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	c0009	1521	1	0	0	1	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	c0010	1515	1	0	0	0	1	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L4_chr11_2939437_2997329	0/1	c0001	1128	312	83	49	123	15	41	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	c0002	1128	10	10	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	c0003	1128	4	3	1	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	c0004	1128	4	0	2	0	1	1	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	c0005	1128	2	2	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	c0006	1128	1	0	0	1	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	c0007	1138	1	0	0	1	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	c0008	1128	1	0	0	1	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L5_chr4_88690913_88702829	0/0	c0001	549	235	63	25	118	6	23	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	1/1	c0002	549	165	23	41	76	6	17	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	c0003	549	7	7	0	0	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	c0004	537	2	0	1	0	0	1	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	c0005	549	2	0	0	2	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	c0006	528	1	1	0	0	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	c0007	549	1	0	1	0	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	c0008	549	1	0	0	0	0	1	copy fasta	NAP1L5	chr4	88690913	88702829
NAPA_chr19_47482637_47520063	1/1	c0001	888	329	76	69	132	14	36	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	c0002	888	5	5	0	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	c0003	888	3	2	1	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	c0004	888	1	1	0	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPB_chr20_23369522_23426488	1/1	c0001	897	367	83	61	180	10	31	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	c0002	897	18	0	0	18	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	c0003	897	6	0	1	0	2	3	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	c0004	897	3	3	0	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPEPLD_chr7_103094776_103154099	0/1	c0001	1182	242	35	45	121	12	28	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	c0002	1182	81	7	13	44	2	15	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	c0003	1182	53	47	6	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	c0004	1182	1	0	0	0	0	1	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	c0005	1182	1	0	0	1	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	c0006	1182	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099