JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAPEPLD_chr7_103094776_103154099	0/0	c0007	1182	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	c0008	1182	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPG_chr18_10521027_10557764	1/1	c0001	939	402	80	74	194	12	40	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	c0002	939	17	16	1	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	c0003	939	4	0	0	4	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	c0004	939	1	0	1	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPRT_chr8_143569785_143583330	0/0	c0001	1617	147	45	18	74	2	8	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0002	1617	121	5	30	57	10	19	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/1	c0003	1617	55	11	11	23	0	9	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0004	1617	36	4	6	21	2	3	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0005	1617	8	7	1	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0006	1617	4	3	1	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0007	1617	4	4	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0008	1617	4	4	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0009	1617	2	2	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0010	1617	2	2	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0011	1617	2	0	2	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0012	1617	2	0	2	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0013	1617	2	2	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0014	1617	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0015	1617	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0016	1617	1	0	1	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0017	1617	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0018	1617	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0019	1617	1	0	0	1	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0020	1617	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0021	1617	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0022	1617	1	0	0	0	0	1	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0023	1617	1	0	0	0	0	1	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0024	1617	1	0	0	1	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0025	1617	1	0	0	0	0	1	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0026	1617	1	0	0	1	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	c0027	1617	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPSA_chr19_50353477_50370639	1/1	c0001	1263	199	37	40	85	8	27	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0002	1263	114	38	22	40	3	11	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0003	1263	7	0	2	0	1	4	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0004	1263	6	6	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0005	1263	5	5	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0006	1263	3	2	1	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0007	1263	2	2	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0008	1263	2	0	0	2	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0009	1263	2	2	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0010	1263	2	0	0	2	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0011	1263	1	1	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0012	1263	1	1	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0013	1263	1	0	0	0	0	1	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0014	1311	1	0	1	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0015	1263	1	1	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0016	1263	1	0	0	0	0	1	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	c0017	1263	1	1	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639