JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AP3D1_chr19_2095988_2156566	0/0	c0013	3648	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0014	3648	1	1	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0015	3648	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0016	3648	1	1	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0017	3648	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0018	3648	1	0	1	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0019	3648	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0020	3648	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0021	3648	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0022	3648	1	0	1	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0023	3648	1	1	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	c0024	3648	1	1	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3M1_chr10_74115255_74155828	1/1	c0001	1257	288	70	52	122	12	30	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	c0002	1257	23	0	1	22	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	c0003	1257	15	12	3	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	c0004	1257	4	0	0	4	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	c0005	1257	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	c0006	1257	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	c0007	1257	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	c0008	1257	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M2_chr8_42148063_42176183	1/1	c0001	1257	387	86	72	179	14	34	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	c0002	1257	2	0	0	2	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	c0003	1257	2	0	0	2	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	c0004	1257	1	0	0	1	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3S1_chr5_115836935_115919081	1/1	c0001	582	376	88	72	158	14	42	copy fasta	AP3S1	chr5	115836935	115919081
AP3S1_chr5_115836935_115919081	0/0	c0002	582	2	2	0	0	0	0	copy fasta	AP3S1	chr5	115836935	115919081
AP3S2_chr15_89825599_89898994	1/1	c0001	582	307	75	72	112	14	32	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	c0002	582	3	3	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	c0003	582	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	c0004	582	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP4B1_chr1_113889194_113909799	1/1	c0001	2220	230	8	46	137	12	25	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0002	2220	131	67	21	27	2	14	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0003	2220	45	3	8	28	1	5	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0004	2220	8	0	0	8	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0005	2220	4	4	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0006	2220	3	0	0	3	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0007	2220	2	2	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0008	2220	2	0	2	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0009	2220	2	2	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0010	2220	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0011	2220	1	0	1	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0012	2220	1	1	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0013	2220	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0014	2220	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0015	2220	1	1	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	c0016	2220	1	0	0	0	1	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4E1_chr15_50903683_51010895	1/1	c0001	3414	191	59	41	61	6	22	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0002	3414	95	2	14	67	4	8	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0003	3414	86	15	18	41	4	8	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0004	3414	6	6	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895