JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAPSA_chr19_50353477_50370639	0/0	c0018	1263	1	0	0	1	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NARF_chr17_82453741_82495537	1/1	c0001	1371	296	53	63	126	13	39	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0002	1371	49	35	9	2	0	3	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0003	1371	3	3	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0004	1371	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0005	1371	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0006	1371	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0007	1371	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0008	1415	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0009	1371	1	0	0	0	1	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0010	1371	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	c0011	1371	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARS1_chr18_57595656_57626836	1/1	c0001	1647	405	83	80	178	16	46	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	c0002	1647	14	11	0	3	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	c0003	1647	1	0	0	1	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS2_chr11_78430968_78579864	0/1	c0001	1434	144	32	26	65	2	18	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	1/0	c0002	1434	106	20	22	56	2	5	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0003	1434	18	15	0	2	0	1	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0004	1434	13	13	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0005	1434	5	5	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0006	1434	2	2	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0007	1434	2	2	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0008	1434	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0009	1434	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0010	1434	1	0	0	1	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	c0011	1434	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NASP_chr1_45579041_45623893	0/0	c0001	2367	147	39	27	60	4	17	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	1/0	c0002	2367	102	21	29	42	1	8	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/1	c0003	2367	24	4	11	0	3	5	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0004	2367	12	0	0	12	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0005	2367	3	0	0	3	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0006	2367	2	2	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0007	2367	2	0	0	2	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0008	2367	2	2	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0009	2367	1	0	0	1	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0010	2367	1	0	0	1	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0011	2367	1	1	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0012	2367	1	0	0	1	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0013	2367	1	0	1	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	c0014	2367	1	1	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NAT10_chr11_34100629_34151908	0/1	c0001	3078	187	36	41	73	7	29	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0002	3078	22	21	0	0	1	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0003	3078	11	9	1	0	0	1	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0004	3078	7	7	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0005	3078	6	6	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0006	3078	4	0	0	4	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0007	3078	3	3	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0008	3078	3	3	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0009	3078	2	0	2	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0010	3078	2	0	1	0	0	1	copy fasta	NAT10	chr11	34100629	34151908