JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAT10_chr11_34100629_34151908	1/0	c0011	3078	2	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0012	3078	2	0	0	0	0	2	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0013	3078	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0014	3078	1	0	0	0	0	1	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0015	3078	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0016	3078	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0017	3078	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0018	3078	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0019	3078	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0020	3078	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0021	3078	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0022	3078	1	0	1	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	c0023	3078	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT14_chr19_55480188_55492566	1/1	c0001	621	366	78	59	181	12	34	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	c0002	621	29	3	10	0	6	10	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	c0003	621	19	18	1	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	c0004	621	3	0	2	0	0	1	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	c0005	611	1	1	0	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	c0006	621	1	0	0	0	0	1	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	c0007	621	1	0	0	1	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT16_chr7_101165496_101185293	1/0	c0001	1110	297	64	47	137	14	34	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	c0002	1110	88	23	6	43	3	13	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/1	c0003	1110	30	0	20	7	1	1	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	c0004	1110	2	1	1	0	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	c0005	1110	2	2	0	0	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	c0006	1110	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	c0007	1083	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	c0008	1110	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT1_chr8_18205109_18228689	1/1	c0001	873	472	94	82	230	17	47	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	c0002	873	3	2	1	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	c0003	873	3	0	1	1	1	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	c0004	873	2	2	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	c0005	873	1	0	0	1	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	c0006	873	1	0	0	0	0	1	copy fasta	NAT1	chr8	18205109	18228689
NAT2_chr8_18386282_18406218	0/0	c0001	873	157	10	25	105	3	14	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0002	873	95	17	14	47	4	13	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/1	c0003	873	68	19	23	4	9	12	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0004	873	32	3	4	25	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0005	873	16	15	1	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0006	873	9	6	2	0	0	1	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	1/0	c0007	873	7	6	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0008	873	6	6	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0009	873	4	2	2	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0010	873	3	2	1	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0011	873	2	2	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0012	873	2	2	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0013	873	1	1	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0014	873	1	0	0	1	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0015	873	1	1	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0016	873	1	0	0	1	0	0	copy fasta	NAT2	chr8	18386282	18406218