JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAT2_chr8_18386282_18406218	0/0	c0017	873	1	1	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0018	873	1	1	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	c0019	873	1	0	0	1	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT8L_chr4_2054327_2074089	1/1	c0001	909	330	86	63	135	12	32	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	c0002	909	30	0	5	25	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	c0003	910	12	2	5	5	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	c0004	910	2	0	1	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	c0005	909	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	c0006	909	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	c0007	909	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	c0008	909	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8_chr2_73635723_73647422	1/1	c0001	684	261	38	36	143	9	33	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0002	684	72	36	20	2	3	11	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0003	684	16	0	0	16	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0004	684	11	10	1	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0005	684	11	2	6	3	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0006	684	6	4	2	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0007	684	4	0	0	4	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0008	684	3	3	0	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0009	684	3	0	0	3	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0010	684	2	0	0	2	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0011	684	1	0	0	1	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0012	684	1	0	0	0	0	1	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0013	684	1	0	0	0	0	1	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0014	684	1	1	0	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0015	684	1	1	0	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0016	684	1	0	1	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	c0017	684	1	1	0	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT9_chr17_74765529_74781345	1/0	c0001	624	311	57	54	141	15	43	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/1	c0002	624	52	20	18	11	0	2	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	c0003	624	14	10	3	0	0	1	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	c0004	624	3	3	0	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	c0005	624	2	0	0	0	0	2	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	c0006	624	1	0	0	1	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	c0007	624	1	0	0	1	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	c0008	624	1	0	0	0	1	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	c0009	624	1	0	1	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NATD1_chr17_21233870_21258410	1/1	c0001	342	410	91	74	180	16	47	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	c0002	342	12	1	10	0	0	1	copy fasta	NATD1	chr17	21233870	21258410
NAV1_chr1_201534127_201831969	1/1	c0001	6495	117	25	26	38	6	20	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0002	6495	25	2	6	14	0	3	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0003	6495	11	0	0	11	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0004	6495	7	7	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0005	6495	3	1	1	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0006	6495	3	3	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0007	6495	3	0	0	0	1	2	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0008	6495	3	3	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0009	6495	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0010	6495	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0011	6495	2	1	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969