JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAV1_chr1_201534127_201831969	0/0	c0012	6495	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0013	6495	2	1	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0014	6495	2	0	1	0	1	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0015	6495	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0016	6495	2	0	2	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0017	6495	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0018	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0019	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0020	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0021	6495	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0022	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0023	6495	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0024	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0025	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0026	6495	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0027	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0028	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0029	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0030	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0031	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0032	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0033	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0034	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0035	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0036	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	c0037	6495	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV2_chr11_19707837_20126601	0/0	c0001	7290	4	0	0	1	1	2	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0002	7290	4	0	1	0	1	2	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0003	7290	3	2	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0004	7290	3	0	3	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0005	7290	2	1	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0006	7290	2	2	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0007	7290	2	2	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0008	7290	2	2	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0009	7290	2	0	2	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0010	7290	2	0	1	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0011	7290	2	1	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0012	7290	2	2	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0013	7290	2	0	2	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0014	7290	2	1	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0015	7290	2	1	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0016	7290	2	0	0	2	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0017	7290	2	0	0	2	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0018	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0019	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0020	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0021	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0022	7290	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0023	7290	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0024	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601