JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAV2_chr11_19707837_20126601	0/0	c0125	7290	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0126	7290	1	0	0	0	0	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0127	7290	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0128	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0129	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0130	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0131	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0132	7290	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0133	7290	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0134	7290	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0135	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0136	7290	1	0	0	0	0	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0137	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0138	7290	1	0	0	0	0	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0139	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0140	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0141	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0142	7290	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	c0143	7290	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV3_chr12_77825894_78218010	0/0	c0001	7158	33	6	8	16	0	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/1	c0002	7158	24	10	7	1	2	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0003	7158	15	0	1	10	2	2	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0004	7158	12	1	0	8	0	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0005	7158	12	4	3	3	1	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0006	7158	10	0	3	2	2	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0007	7158	6	2	2	2	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0008	7158	5	0	1	1	0	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0009	7158	5	0	0	2	0	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0010	7158	4	3	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0011	7158	3	0	0	3	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0012	7158	3	0	1	1	1	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0013	7158	3	0	1	1	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0014	7158	3	3	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0015	7158	2	2	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0016	7158	2	2	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0017	7158	2	2	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0018	7158	2	1	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0019	7158	2	1	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0020	7158	2	0	0	1	1	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0021	7158	2	0	0	2	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0022	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0023	7158	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0024	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0025	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0026	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0027	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0028	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0029	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0030	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0031	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010