JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NAV3_chr12_77825894_78218010	0/0	c0032	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0033	7158	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	1/0	c0034	7158	1	0	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0035	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0036	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0037	7158	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0038	7158	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0039	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0040	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0041	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0042	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0043	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0044	7158	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0045	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0046	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0047	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0048	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0049	7158	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0050	7158	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0051	7158	1	0	0	0	1	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0052	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0053	7158	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0054	7158	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	c0055	7158	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAXD_chr13_110610545_110644996	1/1	c0001	990	314	74	66	125	13	34	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0002	990	35	2	9	15	3	6	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0003	990	29	7	1	18	0	3	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0004	990	2	2	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0005	990	2	0	0	0	0	2	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0006	990	2	2	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0007	990	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0008	990	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0009	990	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0010	990	1	0	0	1	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0011	990	1	0	1	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0012	990	1	0	0	0	0	1	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0013	990	1	0	1	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	c0014	990	1	0	0	1	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXE_chr1_156586776_156599299	0/1	c0001	867	394	79	70	192	10	42	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	1/0	c0002	867	35	19	3	6	2	4	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	c0003	867	2	0	0	2	0	0	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	c0004	867	1	0	1	0	0	0	copy fasta	NAXE	chr1	156586776	156599299
NBAS_chr2_15161916_15566334	1/0	c0001	7116	67	14	10	35	1	6	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/1	c0002	7116	58	5	15	27	3	7	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0003	7116	12	11	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0004	7116	9	4	0	5	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0005	7116	8	1	1	5	1	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0006	7116	6	0	0	5	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0007	7116	4	3	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0008	7116	4	2	2	0	0	0	copy fasta	NBAS	chr2	15161916	15566334