Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCC11_chr16_48160773_48252539	0/0	c0019	4149	2	0	1	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0020	4149	2	0	2	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0021	4149	2	2	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0022	4149	2	2	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0023	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0024	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0025	4149	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0026	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0027	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0028	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0029	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0030	4149	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0031	4149	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0032	4149	1	0	0	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0033	4122	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0034	4149	1	0	0	1	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0035	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0036	4149	1	0	0	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0037	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0038	4149	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0039	4149	1	1	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	c0040	4149	1	0	0	1	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC12_chr16_48075882_48160993	0/0	c0001	4080	28	10	4	9	0	5	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	1/0	c0002	4080	26	13	4	4	1	3	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0003	4080	9	5	0	3	0	1	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0004	4080	8	1	3	0	1	3	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0005	4080	7	7	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0006	4080	6	6	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0007	4080	6	6	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0008	4080	5	5	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0009	4080	5	5	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0010	4078	3	3	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0011	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0012	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0013	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0014	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0015	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0016	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0017	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0018	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/1	c0019	4080	2	0	1	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0020	4080	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0021	4078	2	1	1	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0022	4080	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0023	4080	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0024	4080	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0025	4080	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0026	4080	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0027	4080	1	0	1	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0028	4080	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993