JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AP4E1_chr15_50903683_51010895	0/0	c0005	3414	3	0	0	3	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0006	3414	2	2	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0007	3414	2	2	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0008	3414	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0009	3414	1	0	0	1	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0010	3414	1	0	0	1	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0011	3414	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0012	3414	1	0	0	1	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0013	3414	1	0	1	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	c0014	3414	1	0	0	1	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4M1_chr7_100096643_100114039	1/1	c0001	1362	395	87	59	188	12	47	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	c0002	1362	11	0	7	0	4	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	c0003	1362	3	0	0	0	2	1	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	c0004	1362	2	0	0	2	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	c0005	1362	2	0	2	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	c0006	1362	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	c0007	1362	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	c0008	1362	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4S1_chr14_31020649_31101450	1/1	c0001	435	346	82	56	152	12	42	copy fasta	AP4S1	chr14	31020649	31101450
AP5B1_chr11_65768898_65785976	1/0	c0001	2637	206	26	35	108	12	24	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/1	c0002	2637	67	23	15	26	1	1	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0003	2637	64	16	6	36	1	5	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0004	2637	32	1	15	12	3	1	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0005	2637	10	10	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0006	2637	9	8	1	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0007	2637	9	0	0	9	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0008	2637	2	0	0	0	0	2	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0009	2637	2	0	0	2	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0010	2637	2	2	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0011	2637	2	0	0	2	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0012	2637	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0013	2637	1	0	0	0	0	1	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0014	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0015	2621	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0016	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0017	2622	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0018	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0019	2637	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0020	2637	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0021	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0022	2637	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0023	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0024	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0025	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0026	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0027	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0028	2637	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0029	2637	1	0	0	0	1	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	c0030	2637	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5M1_chr14_57263971_57303742	1/1	c0001	1473	179	19	31	99	10	18	copy fasta	AP5M1	chr14	57263971	57303742